Trim And COnstruct Combined Assembly Transcriptome

TACOCAT was built to streamline the de novo transcriptome assembly process and create a robust reference for downstream analysis. This pipeline starts with raw paired-end Illumina reads in fastq format, quality trims the reads, assembles the reads using multiple assemblers and different k-mer sizes, and outputs a reference classified into primary and alternate sets of transcripts.


My worked solutions to ROSALIND bioinformatics problems.